I continued with the engine bay to allow me to let the engine run for longer. Unfortunately I found a leak from the water pump so removed it and ordered a repair kit.
I removed the water pump from the old engine and found that it has a 12 vane prop so machined the back of that (it was heavily scored) and rebuilt, adjusted and fitted the it. I still have a water leak from the pump so will need to examine it again. It's very annoying. I also have a rattle from the front of the engine and it's not the water pump. I will need to investigate that too.
A picture of the gearbox with the wiring figured out. The clutch doesn't clear but I'm not sure why. It is a new clutch and the pedal is high as you may be able to see.
When running the car to find the coolant leak it suddenly cut out. I didn't even have dash lights so went straight to the sqitch and found some jubious looking wiring. It's now fixed.
I'm not spending too much time on the car at the moment but don't really feel like I'm making much progress anyway. For every problem I fix I seem to uncover at least one more!